Github Hackathon Webpage Updates
A system for evaluating difficult to assess regions that uses SV calls and mappability to generate a genome-wide score
SeqIDMapper provides naming consistency in these input files by converting the sequence feature IDs in the entire file to the desired ID format using a single command
Making NCBI data available using GA4GH methods
Motivate the transition to graph genomes, we developed a simple graph-based genome browser that is accessible at http://graphymcbrowserface.umbc.in
Sidearm searches the SRA database for viruses using the NCBI magicBLAST tool
Generate CNV calls from raw SNP array data using the command line.
A CWL Pipeline and Docker Image for Performing Standard Single-Cell DNA Methylation Analyses
Text-driven identification and ranking of associated gene pairs in PubMed
A tool to visually browse co-occurrence of MeSH terms in PubMeb
Framework for running text mining tools on latest publications.
Comparison and estimation of breakpoints for SVs across different technologies and resources.
Tools to compare structural variants to those in public databases!
10x genomics read simulator, topsorter and danger track.
An R package for using the SRA toolki
Finding expressed variants while streaming data.
A self-guided hands-on RNAseq tutorial designed to run for free on cloud services.
An ideogram-based viewer for whole transcriptome RNAseq experiments.
This tool searches for code cited in PubMed abstracts by searching for popular repositories such as GitHub and Bitbucket.
MetaNetVar is a pipeline for applying network analysis tools for genomic variant analysis.
SNP FSA is a pipeline for applying statistical analysis tools to identify interactions between SNPs and their effects on phenotypic expression.
Tool to create 2D diagrams from 3D protein structures and render them side by side.
Ultrafast transfer of protein structure information from pdb to the NCBI iCN3D viewer
Mapping PDB structures to gene-level in genome browsers, and visualizing SNPs
A crowdsourcing/expert curation platform for metadata categorization
The repository contains scripts to automatically fetch related dbGaP studies and subsequently the specific sequence files for given TCGA data.
A pipeline to learn about the immunogenicity of peptides based on prior data using TensorFlow.
A pipeline to approximate the immunogenicity of peptides resulting from cancer mutations based on structure and other factors.
