Installation

P3 uses a combination of Python and R.

Pipeline automation is handled using the Snakemake build system, and can be easily parallelized to run across multiple CPUs.

Requirements

The deploy/ directory contains requirements files for Python, R, and Ubuntu. These requirements have been included in the Docker container (@TODO link here) The accompanying Dockerfile shows the setup to be performed (using the Bioconductor Docker container as a base) and the container will be eventually provided on docker hub.